Index

C

calculateFDR() (in module gwide.methods) calGC() (in module gwide.methods)

cleanNames() (in module gwide.methods) compare1toRef() (in module gwide.profileAnalyser) compareMoretoRef() (in module gwide.profileAnalyser)

D

define_experiments() (in module gwide.methods)

E

expNameParser() (in module gwide.methods)

F

filter_df() (in module gwide.profileAnalyser)

filterExp() (in module gwide.methods) findPeaks() (in module gwide.methods)

G

getRefFile() (in module gwide.methods)

gwide.methods (module) gwide.profileAnalyser (module)

I

indexOrder() (in module gwide.methods)

L

list_paths_in_current_dir() (in module gwide.methods)

P

plot_as_box_plot() (in module gwide.profileAnalyser) plot_ChIP() (in module gwide.profileAnalyser) plot_diff() (in module gwide.profileAnalyser)

plot_from_csv() (in module gwide.profileAnalyser) plot_heatmap() (in module gwide.profileAnalyser) plot_to_compare() (in module gwide.profileAnalyser)

S

save_csv() (in module gwide.profileAnalyser)